Upgrade a legacy radiator GDS file

Creates a new GDS file and migrates its package metadata namespace from /radiator to /genometranslator. The source file is never modified. Standard SeqArray nodes and all metadata values are preserved.

Usage

upgrade_genome_gds(
  gds,
  filename = NULL,
  overwrite = FALSE,
  open = FALSE,
  verbose = TRUE
)

Arguments

gds

Path to a GDS file or an open GDS connection.

filename

Output filename. When NULL, _genometranslator.gds is appended to the source stem. Default: filename = NULL.

overwrite

Whether an existing output file may be replaced. Default: overwrite = FALSE.

open

Whether to return an open, writable SeqArray connection instead of the output path. Default: open = FALSE.

verbose

Whether to report migration progress.

Default: verbose = TRUE.

Value

Invisibly returns the output path, or an open SeqArray connection when open = TRUE.