Find private alleles — private

The function highlight private alleles by strata, using a GDS or tidy file or object.

Usage

private_alleles(data, strata = NULL, verbose = TRUE)

data: A tidy genomic data frame or another genomic object supported by the calling function.
strata: (path or object) The strata file or object. Additional documentation is available in read_strata. Use that function to whitelist/blacklist populations/individuals. Option to set pop.levels/pop.labels is also available.
verbose: Logical indicating whether progress messages are emitted. Default: verbose = FALSE.

A list with an object highlighting private alleles by markers and strata and a second object with private alleles summarized by strata.

if (FALSE) { # \dontrun{
corals.private.alleles.by.pop <- radr::private_alleles(data = tidy, strata = strata.pop)
} # }