Minor Allele Frequency filter.
private_haplotypes(data, strata = NULL, verbose = TRUE)A tidy genomic dataframe
Used internally in radiator
and might be of interest for users.
How to get a tidy data frame ?
Look into radiator tidy_genomic_data.
(optional) A strata file or object in the global environment.
The strata is a tab-separated data frame with 2 columns: INDIVIDUALS and
STRATA. If used, the strata will replace the current STRATA or POP_ID in the
dataset. Use this argument if you want to find private haplotypes on another
hierarchical level, other than POP_ID.
(optional, logical) When verbose = TRUE
the function is a little more chatty during execution.
Default: verbose = TRUE.
A list with private haplotypes per markers and strata and a summary of overall number of private haplotypes per strata.