Function that generate an Heatmap of Fst and CI values
heatmap_fst( pairwise.fst.full.matrix, pairwise.fst.ci.matrix, pop.levels = NULL, n.s = TRUE, digits = 5, color.low = "blue", color.mid = "yellow", color.high = "red", text.size = 4, plot.size = NULL, path.folder = NULL, filename = NULL )
pairwise.fst.full.matrix | (object or path). |
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pairwise.fst.ci.matrix | (object or path). |
pop.levels | (optional, character, string) If not supplied,
the order is set from the colnames of the full fst matrix.
Default: |
n.s | (optional, logical) To have an * when the Fst value is not
significant (0 is the lower bound of the CI).
Default: |
digits | (optional, integer) The number of digits showed in the heatmap.
Default: |
color.low | (optional, character) Color of lower bound.
Default: |
color.mid | (optional, character) Mid color value.
Default: |
color.high | (optional, character) Color of higher bound.
Default: |
text.size | (optional, integer) Size of the values.
Default: |
plot.size | (optional, integer) By default the size is
|
path.folder | (optional, character)
Default: |
filename | (optional, character) Name of the plot to write.
Default: |