Assignment analysis

assignment_ngs()

Assignment analysis tailored for RADseq data

Fst

fst_NEI87()

A fast implementation of Nei's 1987 Fst (overall and paiwise estimates)

fst_WC84()

A fast implementation of Weir and Cockerham (1984) Fst/Theta (overall and paiwise estimates)

Utility

dlr()

Genotype likelihood ratio distance (Dlr)

heatmap_fst()

heatmap_fst

import_subsamples()

Import individual's assignment results of different subsample folder.

import_subsamples_fst()

Import the fst ranking from all the subsample runs inside an assignment folder.

install_gsi_sim()

downloads gsi_sim that is appropriate for the operating system

Data

data_assigner_sim_01

Simulated dataset to test assigner

data_assigner_sim_02

Simulated dataset to test assigner