Package index • assigner

Assignment analysis

evaluate_assignment(): Population assignment analysis for genomic data
assign_individuals(): Assign individuals to reference strata
assess_assignment_mc(): Monte Carlo assessment of an assignment reference baseline
compare_unsampled_scores(): Compare assigner and WGSassign unsampled-source scores

Population differentiation

fst_NEI87(): A fast implementation of Nei's 1987 Fst (overall and paiwise estimates)
fst_WC84(): A fast implementation of Weir and Cockerham (1984) Fst/Theta (overall and paiwise estimates)
amova_genomic(): Hierarchical AMOVA for incomplete genomic data

Utility

dlr(): Genotype likelihood ratio distance (Dlr)
heatmap_fst(): heatmap_fst
import_subsamples(): Import individual's assignment results of different subsample folder.
import_subsamples_fst(): Import the fst ranking from all the subsample runs inside an assignment folder.
check_gsi_sim(): Check the gsi_sim installation

Data

data_assigner_sim_01: Simulated dataset to test assigner
data_assigner_sim_02: Simulated dataset to test assigner