Simulated dataset to test assigner

Source: R/data.R

A dataset of genotypes containing 500 bi-allelic SNPs, simulated for 250 individuals, 5 populations.

data_assigner_sim_02

Format

A tibble with 125000 rows (genotypes) and 4 variables:

MARKERS

SNPs markers

POP_ID

Populations/strata for the samples

INDIVIDUALS

Samples id

GT

Genotypes coded a la genepop format

Source

The data was simulated with grur https://thierrygosselin.github.io/grur/reference/simulate_rad.html

Details

Dataset simulation caracteristics:

  • num.pops: 5

  • num.loci: 1000

  • div.time: 25e3

  • ne: 200

  • nm: 0.5

  • theta: 0.2

  • mig.type: island

  • mut.rate: 2.5e-4

  • mig.rate: 0.0025

From this simulated dataset, 500 SNPs and 250 individuals (50 ind/pop) were randomly selected.